polecat
Statistics description
node_number
a number to denote this node
parent_number
the number of the parent node
most_recent_tip
the date of the most recent tip
least_recent_tip
the date of the oldest tip
day_range
the span between the most recent and oldest date in days
recency
how many days ago was the most recent tip (from date of analysis)
age
how many days ago was the most oldest tip (from date of analysis)
tip_count
number of tips in this cluster
uk_tip_count
number of UK tips in this cluster
uk_child_count
number of UK direct descendents from this cluster
uk_chain_count
number of UK direct descendents from this cluster with more than one UK tip
haplotype_count
number of descendent tips with zero branch lengths (i.e., identical to the cluster haplotype)
haplotype
a hash of the haplotype sequence
divergence_ratio
the stem length divided by the mean tip divergence
mean_tip_divergence
the average genetic distance between tips in this cluster
stem_length
the length of the branch to the parent node
growth_rate
the number of tips divided by the day range
lineage
the global lineage of this cluster
uk_lineage
the uk lineage of this cluster
proportion_uk
the proportion of tips in this cluster that are from the uk
admin0_count
the number of different countries in this cluster
admin1_count
the number of different UK admin 1 (devolved nations) in this cluster
admin2_count
the number of different UK admin 2 regions in this cluster
admin0_mode
the most frequent country in this cluster
admin1_mode
the most frequent UK admin 1 (devolved nation) in this cluster
admin2_mode
the most frequent UK admin 2 region in this cluster
admin1_entropy
the entropy of UK admin 1 (devolved nations) in this cluster
admin2_entropy
the entropy of UK admin 2 regions in this cluster
tips
a list of IDs of tips in this cluster